Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
UCEC rs28631484 chr5:54389788 T/C 1.81E-7 172 21.3 29.75 20.33 KM Plot
UCEC rs2864265 chr16:29146427 A/G 8.18E-12 174 4.33 22.9 22.38 KM Plot
UCEC rs28672708 chr4:110845886 T/G 1.81E-5 169 21.5 25.87 19.1 KM Plot
UCEC rs28678254 chr11:62151875 G/C 0 171 22.6 20.72 4.33 KM Plot
UCEC rs28681664 chr9:854090 T/C 9.1E-9 172 22.7 18.08 4.5 KM Plot
UCEC rs28741015 chr9:860050 A/T 7.53E-9 172 22.7 21.03 2.28 KM Plot
UCEC rs2879971 chr15:85117468 T/C 0 166 0.87 27.43 22.6 KM Plot
UCEC rs28816080 chr5:54445497 G/A 1.95E-11 168 22.6 22.7 20.33 KM Plot
UCEC rs28886395 chr7:64152262 A/G 0 174 22.57 21.98 2.4 KM Plot
UCEC rs299862 chr1:54949062 C/G 0.000153 166 1.67 22.63 22.38 KM Plot
UCEC rs3082442 chr2:180844009 A/AAAC 0.00013 173 13.63 23.33 22.57 KM Plot
UCEC rs3136556 chr5:54400528 A/T 4.9E-5 174 21.03 24.07 20.33 KM Plot
UCEC rs33959352 chr14:22315296 C/T 3.55E-5 170 22.8 21.18 11.53 KM Plot
UCEC rs33979898 chr10:88717692 TG/T 6.06E-8 167 22.7 21.05 19.12 KM Plot
UCEC rs34072792 chr19:309518 G/A 3.15E-6 167 23.97 19.1 8.3 KM Plot